---
Type: desktop-application
ID: seaview.desktop
Package: seaview
Name:
C: SeaView
Summary:
fr: Édite des aligmements multiples de séquences et les imprime au format PostScript.
C: Edits multiple sequence alignments and prints them in PostScript format.
en: Edits multiple sequence alignments and prints them in PostScript format.
pt_BR: Edita múltiplos alinhamentos de seqüências e os imprimem em formato PostScript.
Description:
C: >-
<p>SeaView reads and writes various file formats (NEXUS, MSF, CLUSTAL, FASTA, PHYLIP, MASE, Newick) of DNA and protein
sequences and of phylogenetic trees. Alignments can be manually edited. It drives the programs Muscle or Clustal Omega
for multiple sequence alignment, and also allows one to use any external alignment algorithm able to read and write FASTA-formatted
files. It computes phylogenetic trees by parsimony using PHYLIP's dnapars/protpars algorithm, by distance with NJ
or BioNJ algorithms on a variety of evolutionary distances, or by maximum likelihood using the program PhyML 3.0. SeaView
draws phylogenetic trees on screen or PostScript files, and allows one to download sequences from EMBL/GenBank/UniProt
using the Internet.</p>
sk: >-
<p>SeaView číta a zapisuje rôzne formáty súborov (NEXUS, MSF, CLUSTAL, FASTA, PHYLIP, MASE, Newick) sekvencií DNA a bielkovín
a fylogenetických stromov. Zarovnania je možné ručne upravovať. Riadi programy Muscle alebo Clustal Omega na viacnásobné
zarovnanie sekvencií a tiež umožňuje používať akýkoľvek externý algoritmus na zarovnanie na čítanie a zápis súborov vo
formáte FASTA. Počíta fylogenetické stromy s šetrnosťou pomocou algoritmu PHYLIP dnapars/protpars, podľa vzdialenosti
pomocou algoritmov NJ alebo BioNJ na rôznych evolučných vzdialenostiach alebo podľa maximálnej pravdepodobnosti pomocou
programu PhyML 3.0. SeaView kreslí fylogenetické stromy na obrazovku alebo do súborov PostScript a umožňuje sťahovať sekvencie
z EMBL/GenBank/UniProt cez internet.</p>
it: >-
<p>SeaView legge e scrive vari formati di file (NEXUS, MSF, CLUSTAL, FASTA, PHYLIP, MASE, Newick) di sequenze di DNA e
proteiche e di alberi filogenetici. Gli allineamenti possono essere modificati a mano. È il motore dei programmi Muscle
o Clustal Omega per l'allineamento multiplo di sequenze e permette anche di utilizzare qualsiasi algoritmo esterno
di allineamento in grado di leggere e scrivere file in formato FASTA. Calcola gli alberi filogenetici in base alla parsimonia
usando l'algoritmo dnapars/protpars di PHYLIP, in base alla distanza su una varietà di distanze evolutive con l'algoritmo
NJ o BioNJ oppure in base alla massima verosimiglianza usando il programma PhyML 3.0. SeaView disegna alberi filogenetici
sullo schermo o in file PostScript e permette di scaricare sequenze da EMBL/GenBank/UniProt usando Internet.</p>
da: >-
<p>SeaView læser og skriver diverse filformater (NEXUS, MSF, CLUSTAL, FASTA, PHYLIP, MASE, Newick) for DNA og proteinsekvenser
og af fylogenetiske træer. Sammenligninger kan redigeres manuelt. SeaView driver programmerne Muscle eller Clustal Omega
for flere sekvenssammenligninger, og giver også mulighed for at bruge alle eksterne sammenligningsalgoritmer, som kan
læse og skrive FASTA-formaterede filer. Programmet beregner fylogenetiske træer og sparer på ressourcerne ved at bruge
PHYLIP's dnapars/protpars-algoritmen, på afstand med NJ- eller BioNJ-algoritmer på en række evolutionære afstande,
eller ved maximum likelihood via programmet PhyML 3.0. SeaView tegner fylogenetiske træer på skærmen eller til PostScript-filer,
og giver mulighed for at hente sekvenser fra EMBL/GenBank/UniProt via internettet.</p>
de: >-
<p>SeaView liest und schreibt unterschiedliche Dateiformate (NEXUS, MSF, CLUSTAL, FASTA, PHYLIP, MASE, Newick) von DNA-
und Proteinsequenzen sowie von phylogenetischen Bäumen. Alignments können manuell bearbeitet werden. Mittels SeaView können
die Programme Muscle oder Clustal Omega multiple Sequenzalignments durchführen. Es erlaubt ebenfalls beliebige externe
Alignment-Algorithmen zu verwenden, die FASTA-formatierte Dateien lesen und schreiben können. SeaView berechnet phylogenetische
Bäume mit Parsinomie mittels PHYLIPs Algorithmus dnapars/protpars, per Distanz mit den Algorithmen NJ oder NioNJ mit einer
Vielzahl an evolutionären Distanzen oder per Maximum-Likelihood mittels dem Programm PhyML 3.0. SeaView zeichnet phylogenetische
Bäume auf dem Bildschirm oder in PostScript-Dateien und ermöglicht den Download von Sequenzen über das Internet bei EMBL/GenBank/UniProt.</p>
en: >-
<p>SeaView reads and writes various file formats (NEXUS, MSF, CLUSTAL, FASTA, PHYLIP, MASE, Newick) of DNA and protein
sequences and of phylogenetic trees. Alignments can be manually edited. It drives the programs Muscle or Clustal Omega
for multiple sequence alignment, and also allows one to use any external alignment algorithm able to read and write FASTA-formatted
files. It computes phylogenetic trees by parsimony using PHYLIP's dnapars/protpars algorithm, by distance with NJ
or BioNJ algorithms on a variety of evolutionary distances, or by maximum likelihood using the program PhyML 3.0. SeaView
draws phylogenetic trees on screen or PostScript files, and allows one to download sequences from EMBL/GenBank/UniProt
using the Internet.</p>
Categories:
- Biology
- Science
- Education
Keywords:
C:
- genomics
Icon:
cached:
- name: seaview_seaview.png
width: 48
height: 48
- name: seaview_seaview.png
width: 64
height: 64
- name: seaview_seaview.png
width: 128
height: 128
stock: seaview
remote:
- url: s/se/seaview.desktop/DD884557A79B9FF9A51FA4D21640DC5F/icons/128x128/seaview_seaview.png
width: 128
height: 128
Launchable:
desktop-id:
- seaview.desktop
Provides:
mimetypes:
- text/x-clustalw-alignment
