---
Type: desktop-application
ID: seaview.desktop
Package: seaview
Name:
C: SeaView
Summary:
fr: Édite des aligmements multiples de séquences et les imprime au format PostScript.
C: Edits multiple sequence alignments and prints them in PostScript format.
pt-BR: Edita múltiplos alinhamentos de seqüências e os imprimem em formato PostScript.
en: Edits multiple sequence alignments and prints them in PostScript format.
Description:
fr: |-
<p>SeaView est un visualisateur et un éditeur pour des alignements multiples de séquence, c'est-à-dire,
des séquences d’ADN ou de protéines sont chacune positionnées dans leur propre ligne distincte, de telle
façon les acides aminés ou nucléiques à une position particulière (colonne) sont supposées avoir les
mêmes propriétés biochimiques. SeaView lit et écrit divers formats de fichiers (NEXUS, MSF, CLUSTAL,
FASTA, PHYLIP, MASE, Newick) de séquences d’ADN et de protéines et d’arbres phylogénétiques. Les alignements
peuvent être édités manuellement. Il pilote les programmes Muscle ou Clustal Omega pour des alignements
multiples de séquences, et permet aussi d’utiliser n’importe quel algorithme externe d’alignement capable
de lire et d'écrire des fichiers au format FASTA. Il calcule les arbres phylogénétiques selon la
parcimonie en utilisant les algorithmes dnapars et protpars de PHYLIP, selon la distance avec les algorithmes
NJ ou BioNJ pour diverses distances d’évolution, ou selon le maximum de vraisemblance en utilisant le
programme PhyML 3.0. SeaView dessine les arbres phylogénétiques sur l’écran ou dans des fichiers PostScript,
et permet de télécharger des séquences d’EMBL, GenBank ou UniProt grâce à Internet.</p>
da: |-
<p>SeaView er en fremviser og redigeringsprogram for sammenligninger af flere sekvenser, dvs. DNA- eller
proteinsekvenser placeres hver især i deres egen separate linje, så at nukleotid/amino-syren på en bestemt
position (kolonne) antages at have den samme biokemiske egenskab. SeaView læser og skriver diverse filformater
(NEXUS, MSF, CLUSTAL, FASTA, PHYLIP, MASE, Newick) for DNA og proteinsekvenser og af fylogenetiske træer.
Sammenligninger kan redigeres manuelt. SeaView driver programmerne Muscle eller Clustal Omega for flere
sekvenssammenligninger, og giver også mulighed for at bruge alle eksterne sammenligningsalgoritmer, som
kan læse og skrive FASTA-formaterede filer. Programmet beregner fylogenetiske træer og sparer på ressourcerne
ved at bruge PHYLIP's dnapars/protpars-algoritmen, på afstand med NJ- eller BioNJ-algoritmer på
en række evolutionære afstande, eller ved maximum likelihood via programmet PhyML 3.0. SeaView tegner
fylogenetiske træer på skærmen eller til PostScript-filer, og giver mulighed for at hente sekvenser fra
EMBL/GenBank/UniProt via internettet.</p>
it: |-
<p>SeaView è un visualizzatore ed editor per allineamenti multipli di sequenze, cioè sequenze di DNA
o proteine sono posizionate ciascuna nella propria riga separata, in modo che il nucleotide/aminoacido
in una particolare posizione (colonna) sia considerato avere la stessa proprietà biochimica. SeaView
legge e scrive vari formati di file (NEXUS, MSF, CLUSTAL, FASTA, PHYLIP, MASE, Newick) di sequenze di
DNA e proteiche e di alberi filogenetici. Gli allineamenti possono essere modificati a mano. È il motore
dei programmi Muscle o Clustal Omega per l'allineamento multiplo di sequenze e permette anche di
utilizzare qualsiasi algoritmo esterno di allineamento in grado di leggere e scrivere file in formato
FASTA. Calcola gli alberi filogenetici in base alla parsimonia usando l'algoritmo dnapars/protpars
di PHYLIP, in base alla distanza su una varietà di distanze evolutive con l'algoritmo NJ o BioNJ
oppure in base alla massima verosimiglianza usando il programma PhyML 3.0. SeaView disegna alberi filogenetici
sullo schermo o in file PostScript e permette di scaricare sequenze da EMBL/GenBank/UniProt usando Internet.</p>
en: |-
<p>SeaView is a viewer and editor of multiple sequence alignments, i.e. DNA or protein sequences are
positioned each in their own separate line, such that the nucleotide/amino acid at a particular position
(column) is presumed to have the same biochemical property. SeaView reads and writes various file formats
(NEXUS, MSF, CLUSTAL, FASTA, PHYLIP, MASE, Newick) of DNA and protein sequences and of phylogenetic trees.
Alignments can be manually edited. It drives the programs Muscle or Clustal Omega for multiple sequence
alignment, and also allows one to use any external alignment algorithm able to read and write FASTA-formatted
files. It computes phylogenetic trees by parsimony using PHYLIP's dnapars/protpars algorithm, by
distance with NJ or BioNJ algorithms on a variety of evolutionary distances, or by maximum likelihood
using the program PhyML 3.0. SeaView draws phylogenetic trees on screen or PostScript files, and allows
one to download sequences from EMBL/GenBank/UniProt using the Internet.</p>
C: |-
<p>SeaView is a viewer and editor of multiple sequence alignments, i.e. DNA or protein sequences are
positioned each in their own separate line, such that the nucleotide/amino acid at a particular position
(column) is presumed to have the same biochemical property. SeaView reads and writes various file formats
(NEXUS, MSF, CLUSTAL, FASTA, PHYLIP, MASE, Newick) of DNA and protein sequences and of phylogenetic trees.
Alignments can be manually edited. It drives the programs Muscle or Clustal Omega for multiple sequence
alignment, and also allows one to use any external alignment algorithm able to read and write FASTA-formatted
files. It computes phylogenetic trees by parsimony using PHYLIP's dnapars/protpars algorithm, by
distance with NJ or BioNJ algorithms on a variety of evolutionary distances, or by maximum likelihood
using the program PhyML 3.0. SeaView draws phylogenetic trees on screen or PostScript files, and allows
one to download sequences from EMBL/GenBank/UniProt using the Internet.</p>
Categories:
- Biology
- Science
- Education
Keywords:
C:
- genomics
Icon:
cached:
- name: seaview_seaview.jxl
width: 48
height: 48
- name: seaview_seaview.jxl
width: 64
height: 64
- name: seaview_seaview.jxl
width: 128
height: 128
remote:
- url: s/se/seaview.desktop/dd884557a79b9ff9a51fa4d21640dc5f/icons/128x128/seaview_seaview.jxl
width: 128
height: 128
stock: seaview
Launchable:
desktop-id:
- seaview.desktop
Provides:
mediatypes:
- text/x-clustalw-alignment
