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Last updated on: 2022-08-14 14:18 [UTC]

Metadata for rockhopper in main

edu.wellesley.cs.rockhoppergui - 2.0.3+dfsg2-3 ⚙ all

Icon
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Type: desktop-application
ID: edu.wellesley.cs.rockhoppergui
Package: rockhopper
Name:
  C: rockhoppergui
Summary:
  C: System for analyzing bacterial RNA-seq data
Description:
  C: >-
    <p>Rockhopper is a comprehensive and user-friendly system for computational analysis of bacterial RNA-seq data. As input,
    Rockhopper takes RNA sequencing reads output by high-throughput sequencing technology (FASTQ, QSEQ, FASTA, SAM, or BAM
    files). Rockhopper supports the following tasks:

    Reference based transcript assembly (when one or more reference genomes are available)Aligning reads to genomesAssembling
    transcriptsIdentifying transcript boundaries and novel transcripts such as small RNAsDe novo transcript assembly (when
    reference genomes are unavailable)Normalizing data from different experimentsQuantifying transcript abundanceTesting for
    differential gene expressionCharacterizing operon structuresVisualizing results in a genome browser</p>
ProjectLicense: GPL-3.0-or-later
Categories:
- Science
- Biology
- DataVisualization
Keywords:
  C:
  - genomics
  - bacterial
  - RNA
  - visualization
Icon:
  cached:
  - name: rockhopper_rockhopper.png
    width: 48
    height: 48
  - name: rockhopper_rockhopper.png
    width: 64
    height: 64
  stock: rockhopper
Launchable:
  desktop-id:
  - rockhoppergui.desktop
ContentRating:
  oars-1.0: {}