Metadata for rockhopper in main

---
Type: desktop-application
ID: edu.wellesley.cs.rockhoppergui
Package: rockhopper
ProjectLicense: GPL-3.0-or-later
Name:
  C: rockhoppergui
Summary:
  C: System for analyzing bacterial RNA-seq data
Description:
  C: >-
    <p>
          Rockhopper is a comprehensive and user-friendly system for computational analysis of bacterial RNA-seq data. As input, Rockhopper
    takes RNA sequencing reads output by high-throughput sequencing technology (FASTQ, QSEQ, FASTA, SAM, or BAM files). Rockhopper supports
    the following tasks:
    Reference based transcript assembly (when one or more reference genomes are available)Aligning reads to genomesAssembling transcriptsIdentifying
    transcript boundaries and novel transcripts such as small RNAsDe novo transcript assembly (when reference genomes are unavailable)Normalizing
    data from different experimentsQuantifying transcript abundanceTesting for differential gene expressionCharacterizing operon structuresVisualizing
    results in a genome browser
        </p>
Categories:
- Science
- Biology
- DataVisualization
Keywords:
  C:
  - genomics
  - bacterial
  - RNA
  - visualization
Icon:
  cached:
  - name: rockhopper_rockhopper.jxl
    width: 48
    height: 48
  - name: rockhopper_rockhopper.jxl
    width: 64
    height: 64
  stock: rockhopper
Launchable:
  desktop-id:
  - rockhoppergui.desktop
ContentRating:
  oars-1.0: {}