---
Type: desktop-application
ID: seaview.desktop
Package: seaview
Name:
C: SeaView
Summary:
fr: Édite des aligmements multiples de séquences et les imprime au format PostScript.
C: Edits multiple sequence alignments and prints them in PostScript format.
pt-BR: Edita múltiplos alinhamentos de seqüências e os imprimem em formato PostScript.
en: Edits multiple sequence alignments and prints them in PostScript format.
Description:
fr: >-
<p>SeaView est un visualisateur et un éditeur pour des alignements multiples de séquence, c'est-à-dire, des séquences d’ADN ou
de protéines sont chacune positionnées dans leur propre ligne distincte, de telle façon les acides aminés ou nucléiques à une position
particulière (colonne) sont supposées avoir les mêmes propriétés biochimiques. SeaView lit et écrit divers formats de fichiers (NEXUS,
MSF, CLUSTAL, FASTA, PHYLIP, MASE, Newick) de séquences d’ADN et de protéines et d’arbres phylogénétiques. Les alignements peuvent
être édités manuellement. Il pilote les programmes Muscle ou Clustal Omega pour des alignements multiples de séquences, et permet
aussi d’utiliser n’importe quel algorithme externe d’alignement capable de lire et d'écrire des fichiers au format FASTA. Il
calcule les arbres phylogénétiques selon la parcimonie en utilisant les algorithmes dnapars et protpars de PHYLIP, selon la distance
avec les algorithmes NJ ou BioNJ pour diverses distances d’évolution, ou selon le maximum de vraisemblance en utilisant le programme
PhyML 3.0. SeaView dessine les arbres phylogénétiques sur l’écran ou dans des fichiers PostScript, et permet de télécharger des séquences
d’EMBL, GenBank ou UniProt grâce à Internet.</p>
da: >-
<p>SeaView er en fremviser og redigeringsprogram for sammenligninger af flere sekvenser, dvs. DNA- eller proteinsekvenser placeres
hver især i deres egen separate linje, så at nukleotid/amino-syren på en bestemt position (kolonne) antages at have den samme biokemiske
egenskab. SeaView læser og skriver diverse filformater (NEXUS, MSF, CLUSTAL, FASTA, PHYLIP, MASE, Newick) for DNA og proteinsekvenser
og af fylogenetiske træer. Sammenligninger kan redigeres manuelt. SeaView driver programmerne Muscle eller Clustal Omega for flere
sekvenssammenligninger, og giver også mulighed for at bruge alle eksterne sammenligningsalgoritmer, som kan læse og skrive FASTA-formaterede
filer. Programmet beregner fylogenetiske træer og sparer på ressourcerne ved at bruge PHYLIP's dnapars/protpars-algoritmen, på
afstand med NJ- eller BioNJ-algoritmer på en række evolutionære afstande, eller ved maximum likelihood via programmet PhyML 3.0.
SeaView tegner fylogenetiske træer på skærmen eller til PostScript-filer, og giver mulighed for at hente sekvenser fra EMBL/GenBank/UniProt
via internettet.</p>
it: >-
<p>SeaView è un visualizzatore ed editor per allineamenti multipli di sequenze, cioè sequenze di DNA o proteine sono posizionate ciascuna
nella propria riga separata, in modo che il nucleotide/aminoacido in una particolare posizione (colonna) sia considerato avere la
stessa proprietà biochimica. SeaView legge e scrive vari formati di file (NEXUS, MSF, CLUSTAL, FASTA, PHYLIP, MASE, Newick) di sequenze
di DNA e proteiche e di alberi filogenetici. Gli allineamenti possono essere modificati a mano. È il motore dei programmi Muscle o
Clustal Omega per l'allineamento multiplo di sequenze e permette anche di utilizzare qualsiasi algoritmo esterno di allineamento
in grado di leggere e scrivere file in formato FASTA. Calcola gli alberi filogenetici in base alla parsimonia usando l'algoritmo
dnapars/protpars di PHYLIP, in base alla distanza su una varietà di distanze evolutive con l'algoritmo NJ o BioNJ oppure in base
alla massima verosimiglianza usando il programma PhyML 3.0. SeaView disegna alberi filogenetici sullo schermo o in file PostScript
e permette di scaricare sequenze da EMBL/GenBank/UniProt usando Internet.</p>
en: >-
<p>SeaView is a viewer and editor of multiple sequence alignments, i.e. DNA or protein sequences are positioned each in their own
separate line, such that the nucleotide/amino acid at a particular position (column) is presumed to have the same biochemical property.
SeaView reads and writes various file formats (NEXUS, MSF, CLUSTAL, FASTA, PHYLIP, MASE, Newick) of DNA and protein sequences and
of phylogenetic trees. Alignments can be manually edited. It drives the programs Muscle or Clustal Omega for multiple sequence alignment,
and also allows one to use any external alignment algorithm able to read and write FASTA-formatted files. It computes phylogenetic
trees by parsimony using PHYLIP's dnapars/protpars algorithm, by distance with NJ or BioNJ algorithms on a variety of evolutionary
distances, or by maximum likelihood using the program PhyML 3.0. SeaView draws phylogenetic trees on screen or PostScript files,
and allows one to download sequences from EMBL/GenBank/UniProt using the Internet.</p>
C: >-
<p>SeaView is a viewer and editor of multiple sequence alignments, i.e. DNA or protein sequences are positioned each in their own
separate line, such that the nucleotide/amino acid at a particular position (column) is presumed to have the same biochemical property.
SeaView reads and writes various file formats (NEXUS, MSF, CLUSTAL, FASTA, PHYLIP, MASE, Newick) of DNA and protein sequences and
of phylogenetic trees. Alignments can be manually edited. It drives the programs Muscle or Clustal Omega for multiple sequence alignment,
and also allows one to use any external alignment algorithm able to read and write FASTA-formatted files. It computes phylogenetic
trees by parsimony using PHYLIP's dnapars/protpars algorithm, by distance with NJ or BioNJ algorithms on a variety of evolutionary
distances, or by maximum likelihood using the program PhyML 3.0. SeaView draws phylogenetic trees on screen or PostScript files,
and allows one to download sequences from EMBL/GenBank/UniProt using the Internet.</p>
Categories:
- Biology
- Science
- Education
Keywords:
C:
- genomics
Icon:
cached:
- name: seaview_seaview.jxl
width: 48
height: 48
- name: seaview_seaview.jxl
width: 64
height: 64
- name: seaview_seaview.jxl
width: 128
height: 128
remote:
- url: s/se/seaview.desktop/dd884557a79b9ff9a51fa4d21640dc5f/icons/128x128/seaview_seaview.jxl
width: 128
height: 128
stock: seaview
Launchable:
desktop-id:
- seaview.desktop
Provides:
mediatypes:
- text/x-clustalw-alignment
