---
Type: desktop-application
ID: seaview.desktop
Package: seaview
Name:
C: SeaView
Summary:
fr: Édite des aligmements multiples de séquences et les imprime au format PostScript.
C: Edits multiple sequence alignments and prints them in PostScript format.
pt-BR: Edita múltiplos alinhamentos de seqüências e os imprimem em formato PostScript.
en: Edits multiple sequence alignments and prints them in PostScript format.
Description:
fr: >-
<p>SeaView est un visualisateur et un éditeur pour des alignements multiples de séquence, c'est-à-dire, des séquences d’ADN ou de
protéines sont chacune positionnées dans leur propre ligne distincte, de telle façon les acides aminés ou nucléiques à une position particulière
(colonne) sont supposées avoir les mêmes propriétés biochimiques. SeaView lit et écrit divers formats de fichiers (NEXUS, MSF, CLUSTAL,
FASTA, PHYLIP, MASE, Newick) de séquences d’ADN et de protéines et d’arbres phylogénétiques. Les alignements peuvent être édités manuellement.
Il pilote les programmes Muscle ou Clustal Omega pour des alignements multiples de séquences, et permet aussi d’utiliser n’importe quel
algorithme externe d’alignement capable de lire et d'écrire des fichiers au format FASTA. Il calcule les arbres phylogénétiques selon
la parcimonie en utilisant les algorithmes dnapars et protpars de PHYLIP, selon la distance avec les algorithmes NJ ou BioNJ pour diverses
distances d’évolution, ou selon le maximum de vraisemblance en utilisant le programme PhyML 3.0. SeaView dessine les arbres phylogénétiques
sur l’écran ou dans des fichiers PostScript, et permet de télécharger des séquences d’EMBL, GenBank ou UniProt grâce à Internet.</p>
da: >-
<p>SeaView er en fremviser og redigeringsprogram for sammenligninger af flere sekvenser, dvs. DNA- eller proteinsekvenser placeres hver
især i deres egen separate linje, så at nukleotid/amino-syren på en bestemt position (kolonne) antages at have den samme biokemiske egenskab.
SeaView læser og skriver diverse filformater (NEXUS, MSF, CLUSTAL, FASTA, PHYLIP, MASE, Newick) for DNA og proteinsekvenser og af fylogenetiske
træer. Sammenligninger kan redigeres manuelt. SeaView driver programmerne Muscle eller Clustal Omega for flere sekvenssammenligninger,
og giver også mulighed for at bruge alle eksterne sammenligningsalgoritmer, som kan læse og skrive FASTA-formaterede filer. Programmet
beregner fylogenetiske træer og sparer på ressourcerne ved at bruge PHYLIP's dnapars/protpars-algoritmen, på afstand med NJ- eller
BioNJ-algoritmer på en række evolutionære afstande, eller ved maximum likelihood via programmet PhyML 3.0. SeaView tegner fylogenetiske
træer på skærmen eller til PostScript-filer, og giver mulighed for at hente sekvenser fra EMBL/GenBank/UniProt via internettet.</p>
it: >-
<p>SeaView è un visualizzatore ed editor per allineamenti multipli di sequenze, cioè sequenze di DNA o proteine sono posizionate ciascuna
nella propria riga separata, in modo che il nucleotide/aminoacido in una particolare posizione (colonna) sia considerato avere la stessa
proprietà biochimica. SeaView legge e scrive vari formati di file (NEXUS, MSF, CLUSTAL, FASTA, PHYLIP, MASE, Newick) di sequenze di DNA
e proteiche e di alberi filogenetici. Gli allineamenti possono essere modificati a mano. È il motore dei programmi Muscle o Clustal Omega
per l'allineamento multiplo di sequenze e permette anche di utilizzare qualsiasi algoritmo esterno di allineamento in grado di leggere
e scrivere file in formato FASTA. Calcola gli alberi filogenetici in base alla parsimonia usando l'algoritmo dnapars/protpars di
PHYLIP, in base alla distanza su una varietà di distanze evolutive con l'algoritmo NJ o BioNJ oppure in base alla massima verosimiglianza
usando il programma PhyML 3.0. SeaView disegna alberi filogenetici sullo schermo o in file PostScript e permette di scaricare sequenze
da EMBL/GenBank/UniProt usando Internet.</p>
en: >-
<p>SeaView is a viewer and editor of multiple sequence alignments, i.e. DNA or protein sequences are positioned each in their own separate
line, such that the nucleotide/amino acid at a particular position (column) is presumed to have the same biochemical property. SeaView
reads and writes various file formats (NEXUS, MSF, CLUSTAL, FASTA, PHYLIP, MASE, Newick) of DNA and protein sequences and of phylogenetic
trees. Alignments can be manually edited. It drives the programs Muscle or Clustal Omega for multiple sequence alignment, and also allows
one to use any external alignment algorithm able to read and write FASTA-formatted files. It computes phylogenetic trees by parsimony
using PHYLIP's dnapars/protpars algorithm, by distance with NJ or BioNJ algorithms on a variety of evolutionary distances, or by
maximum likelihood using the program PhyML 3.0. SeaView draws phylogenetic trees on screen or PostScript files, and allows one to download
sequences from EMBL/GenBank/UniProt using the Internet.</p>
C: >-
<p>SeaView is a viewer and editor of multiple sequence alignments, i.e. DNA or protein sequences are positioned each in their own separate
line, such that the nucleotide/amino acid at a particular position (column) is presumed to have the same biochemical property. SeaView
reads and writes various file formats (NEXUS, MSF, CLUSTAL, FASTA, PHYLIP, MASE, Newick) of DNA and protein sequences and of phylogenetic
trees. Alignments can be manually edited. It drives the programs Muscle or Clustal Omega for multiple sequence alignment, and also allows
one to use any external alignment algorithm able to read and write FASTA-formatted files. It computes phylogenetic trees by parsimony
using PHYLIP's dnapars/protpars algorithm, by distance with NJ or BioNJ algorithms on a variety of evolutionary distances, or by
maximum likelihood using the program PhyML 3.0. SeaView draws phylogenetic trees on screen or PostScript files, and allows one to download
sequences from EMBL/GenBank/UniProt using the Internet.</p>
Categories:
- Biology
- Science
- Education
Keywords:
C:
- genomics
Icon:
cached:
- name: seaview_seaview.png
width: 48
height: 48
- name: seaview_seaview.png
width: 64
height: 64
- name: seaview_seaview.png
width: 128
height: 128
remote:
- url: s/se/seaview.desktop/dd884557a79b9ff9a51fa4d21640dc5f/icons/128x128/seaview_seaview.png
width: 128
height: 128
stock: seaview
Launchable:
desktop-id:
- seaview.desktop
Provides:
mediatypes:
- text/x-clustalw-alignment
